PlotCelltype: PlotCelltype

In alexthiery/scHelper: R package containing helper functions for single cell analysis

PlotCelltype

Description

Calculate average expression for groups of genes across Seurat clusters and plot BoxPlots.

Usage

PlotCelltype(
  seurat_obj,
  gene_list,
  group_by = "seurat_clusters",
  x_lab = "Cluster ID",
  quantiles = c(0.05, 0.95),
  ...
)

Arguments

seurat_obj	Seurat object
gene_list	Named list of genes passed to seurat::AddModuleScore
group_by	[e-mail] column containing cell clusters
x_lab	label for x axis
quantiles	Percent quantile to plot on bar plots. Can be either a single element or an array (length 2) with lower and upper percent quantiles
...	Extra arguments passed to grid.arrange

Value

plot output from grid.arrange

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.