GeneModuleClassify: #' GeneModuleClassify

In alexthiery/scHelper: R package containing helper functions for single cell analysis

#' GeneModuleClassify

Description

This function retrieves gene module classifications using cell module score columns in seurat object.

Usage

GeneModuleClassify(
  seurat_obj,
  gene_modules,
  metadata = NULL,
  plot_path = "scHelper_log/GM_classification/"
)

Arguments

seurat_obj	Seurat object
gene_modules	List of gene modules generated by antler package
metadata	metadata slot to group cells by e.g. stage, scHelper_cell_state, run
plot_path	directory to plot log files (boxplots)

Value

ordered dataframe of gene modules and their classifications

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.