ClustRes: Plot multiple cluster resolutions
In alexthiery/scHelper: R package containing helper functions for single cell analysis
ClustRes R Documentation
Plot multiple cluster resolutions
Description
This function plots UMAPs for a series of nine cluster resolutions, alongside a clustree which reveals the relationship between clusters at different resolutions
Usage
ClustRes(seurat_object, by = 0.1, starting_res = 0, prefix = "RNA_snn_res.")
Arguments
seurat_object
Seurat object
by
value by which resolution is incremented
starting_res
lowest resolution to cluster cells by
prefix
prefix used to select metadata columns with cluster identities following clustering
Value
plot generated by grid extra
alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.
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| ClustRes | R Documentation |
Plot multiple cluster resolutions
Description
This function plots UMAPs for a series of nine cluster resolutions, alongside a clustree which reveals the relationship between clusters at different resolutions
Usage
ClustRes(seurat_object, by = 0.1, starting_res = 0, prefix = "RNA_snn_res.")
Arguments
seurat_object |
Seurat object |
by |
value by which resolution is incremented |
starting_res |
lowest resolution to cluster cells by |
prefix |
prefix used to select metadata columns with cluster identities following clustering |
Value
plot generated by grid extra
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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