ArchRCellCounting: ArchR function: Plot table of cell counts from different...

In alexthiery/scHelper: R package containing helper functions for single cell analysis

ArchR function: Plot table of cell counts from different groups

Description

This function counts how many cells from each cluster/sample are assigned the same label/cluster

Usage

ArchRCellCounting(
  ArchR = ArchR,
  group1 = "clusters",
  group2 = "stage",
  print_table = TRUE,
  scHelper_cell_type_order = scHelper_cell_type_order
)

Arguments

ArchR	ArchR object
group1	first column to split cells by
group2	second column to split cells by
print_table	boolean to print table or return it
scHelper_cell_type_order	order in which to return cell types

Value

table of cell counts, or plots table directly

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.