SEACells_MetacellFrequencies: SEACells function: Frequency of metacells in each category

In alexthiery/scHelper: R package containing helper functions for single cell analysis

SEACells function: Frequency of metacells in each category

Description

Function to take seurat object and a category and make a freq table of how frequently metacells found in each category

Usage

SEACells_MetacellFrequencies(
  seurat,
  metacell_slot = "SEACell",
  category = "stage",
  calc_proportions = FALSE
)

Arguments

seurat	seurat object
metacell_slot	slot in seurat metadata by which to group cells for summarising, default is "SEACell"
category	slot in seurat metadata by which to count metacell frequencies, default is "stage"
calc_proportions	boolean as to whether to calculate proportions of metacells in each category

Value

dataframe of either frequency of metacells in each category or proportions of metacells in each category

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.