SEACells_SummariseSeuratData: SEACells function: Summarises data from seurat object across...
In alexthiery/scHelper: R package containing helper functions for single cell analysis

SEACells_SummariseSeuratData

R Documentation

SEACells function: Summarises data from seurat object across SEACells

This function takes a seurat object and summarises the data from data_slot by SEACells grouping

SEACells_SummariseSeuratData(
  seurat,
  data_slot = "counts",
  category = "SEACell"
)

`seurat`	seurat object
`data_slot`	which assay in seurat object to summarise, default is "counts"
`category`	slot in seurat metadata by which to group cells for summarising, default is "SEACell"

dataframe with summarised data across groupings

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.

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