OrderCellClusters: Automatic ordering of cell clusters based on cluster...
In alexthiery/scHelper: R package containing helper functions for single cell analysis
View source: R/OrderCellClusters.R
OrderCellClusters R Documentation
Automatic ordering of cell clusters based on cluster composition
Description
This function orders cell clusters by a column in the seurat metadata. i.e. sort seurat clusters by their developmental stage, with clusters shared between stages ordered in between those stages
Usage
OrderCellClusters(seurat_object, col_to_sort, sort_by)
Arguments
seurat_object
Seurat object
col_to_sort
seurat_object@meta.data column to be re-arranged (i.e. clusters). Only rearrange cluster if at least 10% of cells in cluster are from a different identity
sort_by
array containing factor levels passed to col_to_sort (i.e. developmental stage)
Value
array of cluster IDs automatically ordered based on their composition
alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.
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View source: R/OrderCellClusters.R
| OrderCellClusters | R Documentation |
Automatic ordering of cell clusters based on cluster composition
Description
This function orders cell clusters by a column in the seurat metadata. i.e. sort seurat clusters by their developmental stage, with clusters shared between stages ordered in between those stages
Usage
OrderCellClusters(seurat_object, col_to_sort, sort_by)
Arguments
seurat_object |
Seurat object |
col_to_sort |
seurat_object@meta.data column to be re-arranged (i.e. clusters). Only rearrange cluster if at least 10% of cells in cluster are from a different identity |
sort_by |
array containing factor levels passed to col_to_sort (i.e. developmental stage) |
Value
array of cluster IDs automatically ordered based on their composition
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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