ClustStagePlot: DimPlots of cell stage and cluster identities
In alexthiery/scHelper: R package containing helper functions for single cell analysis

ClustStagePlot

R Documentation

DimPlots of cell stage and cluster identities

This function plots UMAPs for cell stage and cluster identities

ClustStagePlot(
  seurat_object,
  cluster_col = "seurat_clusters",
  stage_col = "orig.ident",
  label_clusters = FALSE,
  plot_legend = TRUE
)

`seurat_object`	Seurat object
`cluster_col`	seurat_object@meta.data column containing cell clusters
`stage_col`	seurat_object@meta.data column containing cell stage
`label_clusters`	boolean whether to plot labels ontop of clusters
`plot_legend`	boolean whether to plot legend when label_clusters == TRUE

plot generated by grid extra

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.

alexthiery/scHelper index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.