Files in alexthiery/scHelper
R package containing helper functions for single cell analysis
.Rbuildignore
.github/workflows/docker-build-push-eva.yml
.github/workflows/docker-build-push.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ArchR_AddUniqueIdsToSe.R
R/ArchR_CellCounting.R
R/ArchR_CellCountsHeatmap.R
R/ArchR_ClustRes.R
R/ArchR_ExtractIds.R
R/ArchR_ExtractMeansFromSe.R
R/ArchR_FeaturePlotGrid.R
R/ArchR_IdentifyOutliers.R
R/ArchR_PlotMarkerHeatmap.R
R/ArchR_SplitbyStage.R
R/ArchR_pseudoreplicate_counts.R
R/ArchR_subset.R
R/AverageGeneModules.R
R/BoxPlot.R
R/CellLabelPieCharts.R
R/CheckIntegration.R
R/ClustRes.R
R/ClustStagePlot.R
R/ClusterClassification.R
R/ClusterDimplot.R
R/CreateCellTypeAnnotation.R
R/CreateStageAnnotation.R
R/DEGeneModules.R
R/ElbowCutoff.R
R/ExportAntlerModules.R
R/ExtractModuleContents.R
R/GeneModuleClassify.R
R/GeneModuleOrder.R
R/GeneModulePheatmap.R
R/IdentifyOutliers.R
R/MultiFeaturePlot.R
R/OrderCellClusters.R
R/PCALevelComparison.R
R/PlotCelltype.R
R/PlotGeneVariance.R
R/PlotOutliers.R
R/PrepPeakModuleHeatmap.R
R/QCPlot.R
R/SEACells_MetacellFrequencies.R
R/SEACells_PiechartProportionThreshold.R
R/SEACells_SummariseGeneScoreMatrix.R
R/SEACells_SummariseSeuratData.R
R/SubsetGeneModules.R
R/TenxPheatmap.R
R/UMAPGeneList.R
R/ggPlotColours.R
README.md
containers/VERSION
containers/archr_dev_macs2-schelper/Dockerfile
containers/archr_macs2-schelper/Dockerfile
containers/archr_macs2_seurat-schelper/Dockerfile
containers/base/Dockerfile
containers/dependencies/Dockerfile
containers/scmega-schelper/Dockerfile
containers/seurat-schelper/Dockerfile
man/ArchRAddUniqueIdsToSe.Rd
man/ArchRCellCounting.Rd
man/ArchRCellCountsHeatmap.Rd
man/ArchR_ClustRes.Rd
man/ArchR_ExtractIds.Rd
man/ArchR_ExtractMeansFromSe.Rd
man/ArchR_FeaturePlotGrid.Rd
man/ArchR_IdentifyOutliers.Rd
man/ArchR_PlotMarkerHeatmap.Rd
man/ArchR_PseudoreplicateCounts.Rd
man/ArchR_SplitbyStage.Rd
man/ArchR_Subset.Rd
man/AverageGeneModules.Rd
man/BoxPlot.Rd
man/CellLabelPieCharts.Rd
man/CheckIntegration.Rd
man/ClustRes.Rd
man/ClustStagePlot.Rd
man/ClusterClassification.Rd
man/ClusterDimplot.Rd
man/CreateCellTypeAnnotation.Rd
man/CreateStageAnnotation.Rd
man/DEGeneModules.Rd
man/ElbowCutoff.Rd
man/ExportAntlerModules.Rd
man/ExtractModuleContents.Rd
man/GeneModuleClassify.Rd
man/GeneModuleOrder.Rd
man/GeneModulePheatmap.Rd
man/IdentifyOutliers.Rd
man/MultiFeaturePlot.Rd
man/OrderCellClusters.Rd
man/PCALevelComparison.Rd
man/PlotCelltype.Rd
man/PlotGeneVariance.Rd
man/PlotOutliers.Rd
man/PrepPeakModuleHeatmap.Rd
man/QCPlot.Rd
man/SEACells_MetacellFrequencies.Rd
man/SEACells_PiechartProportionThreshold.Rd
man/SEACells_SummariseGeneScoreMatrix.Rd
man/SEACells_SummariseSeuratData.Rd
man/SubsetGeneModules.Rd
man/TenxPheatmap.Rd
man/UMAPGeneList.Rd
man/ggPlotColours.Rd
scHelper.Rproj
