Man pages for barzine/barzinePhdData
Data to be used with barzinePhdR
| brawand.htseq.fpkm | Gene expression for Brawand et al. (ArrayExpress... |
| brawand.htseq.fpkm.pooled | Gene expression for Brawand et al. (ArrayExpress... |
| brawand.htseq.raw | Gene expression for Brawand et al. (ArrayExpress... |
| brawand.htseq.raw.pooled | Gene expression for Brawand et al. (ArrayExpress... |
| castle.htseq.fpkm | Gene expression for Castle et al. (ArrayExpress E-MTAB-305)... |
| castle.htseq.raw | Gene expression for Castle et al. (ArrayExpress E-MTAB-305)... |
| completePalette | Colour palette covering all the tissues of the five... |
| cutler.top3 | Protein expression for Cutler Lab data mapped to Ensembl 76... |
| datasetCol | Colour palette which associates one colour to each of the... |
| extractWithinSampleAbundance | Extract columns that contains "WithInSampleAbundance." in... |
| extractWithinSampleTop3Abundance | Extract columns that contains "WithInSampleTop3Abundance." in... |
| extractWithTag | Allows to create a function that extracts the columns that... |
| fixNamesBrawand | Homogenise the names of the Brawand et al. data with the... |
| fixNamesCutler | Homogenise the names of the Cutler data with the other... |
| fixNamesGtex | Homogenise the names of the GTEx data with the other datasets... |
| fixNamesKuster | Homogenise the names of the Kuster data with the other... |
| fixNamesPandey | Homogenise the names of the Pandey data with the other... |
| fixNamesUhlen | Homogenise the names of the Uhlen et al. data with the other... |
| geneInfoEns76 | Different gene information based on Ensembl 76 (GRCh38) |
| gene.mapID | Map between the Ensembl gene ids and their gene symbol based... |
| g.mitoch | Vector with ensembl id of genes that are annotated as found... |
| goAnnot.76 | Different gene information based on Ensembl 76 (GRCh38) |
| g.Pcoding | Vector with ensembl id of genes that are annotated as coding... |
| gtex.cufflinks.fpkm.pooled | Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl... |
| gtex.cufflinks.tpm.pooled | Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl... |
| gtex.htseq.fpkm.pooled | Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl... |
| gtex.htseq.tpm.pooled | Gene expression for GTEx (phs000424.v4.p1) mapped to Ensembl... |
| ibm.htseq.fpkm | Gene expression for Illumina Body Map (ArrayExpress... |
| ibm.htseq.raw | Gene expression for Illumina Body Map (ArrayExpress... |
| kuster.ppkm | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| kuster.ppkm.all | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| kuster.ppm | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| kuster.ppm.all | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| kuster.top3 | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| kuster.top3.all | Protein expression for Kuster Lab data mapped to Ensembl 76... |
| mergeUterus | Allow to merge the two tissues samples related to uterus in... |
| NAto0 | Convert all missing values to 0 |
| pandey.ppkm | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| pandey.ppkm.15 | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| pandey.ppm | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| pandey.ppm.15 | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| pandey.top3 | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| pandey.top3.15 | Protein expression for Pandey Lab data mapped to Ensembl 76... |
| removeClusters | Remove the proteins that are part of a cluster |
| selectTigerGenes | TiGER reports TS genes for thirty independent tissues (based... |
| simpleCap | Capitalise the first character of a string |
| smallerSubsetTigerMix | TiGER reports TS genes for thirty independent tissues (based... |
| Tiger23Tissues | TiGER reports TS genes for thirty independent tissues (based... |
| Tiger4Tissues | Tiger4Tissues TiGER reports TS genes for thirty independent... |
| TissueCol_12 | Colour palette for the twelve common tissues between Uhlén et... |
| TissueCol_17 | Colour palette of the union of the common tissues between... |
| TissueCol_21 | Extended colour palette for tissues for Pandey Lab, Kuster,... |
| TissueCol_23 | Extended colour palette for tissues for Pandey Lab, Kuster,... |
| TissueCol_62 | Colour palette covering most of the tissues that are in... |
| uhlen.cufflinks.fpkm | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.fpkm.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.fpkm.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.raw | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.raw.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.raw.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.tpm | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.tpm.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.cufflinks.tpm.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.fpkm | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.fpkm.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.fpkm.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.raw | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.raw.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.raw.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.tpm | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.tpm.pooled | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
| uhlen.htseq.tpm.pooled.tech | Gene expression for Uhlén et al. (ArrayExpress E-MTAB-2836)... |
