annotateEventCoords: annotate event coordinates with exon/transcript/gene ids.

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

annotate event coordinates with exon/transcript/gene ids.

Usage

annotateEventCoords(eventCoords, betweenExons, exons)

Arguments

eventCoords	Granges with event coordinates
betweenExons	data.frame with related differential splicing event ids and reference transcript_ids
exons	reference exons GRanges

Value

eventCoords Granges with annotations

Author(s)

Beth Signal

See Also

Other rmats data processing: altIntronRmats(), altSpliceSiteRmats(), annotateOverlapRmats(), betweenNumbers(), duplicateReference(), exonsToIntrons(), extractEvent(), filterRmatsEvents(), readRmatsDataSet(), reformatExons(), removeDuplicatePairs(), removeExonsBetween(), rmatsTranscriptChangeSummary(), skipExonByJunction(), splitLongExons()

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.