readLeafcutterJunctions: Create junction ranges from STAR junction files

Description Usage Arguments Value Author(s) See Also Examples

View source: R/leafCutter.R

Description

Create junction ranges from STAR junction files

Usage

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readLeafcutterJunctions(junctionFiles, minReads = 10)

Arguments

junctionFiles

list of files with STAR junctions

minReads

minimum number of reads a junction requires to be kept

Value

GRanges object with junctions

Author(s)

Beth Signal

See Also

Other leafcutter splicing isoform creation: alternativeIntronUsage(), leafcutterIntronsToExons(), makeNewLeafExonsUnanchored(), makeNewLeafExons()

Examples

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junction_files <- list.files(system.file("extdata","leaf_small",
package="GeneStructureTools"), full.names=TRUE, pattern=".junc")
leaf_junc <- readLeafcutterJunctions(junction_files)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.