Description Usage Arguments Value Author(s) See Also Examples
Create junction ranges from STAR junction files
1 | readLeafcutterJunctions(junctionFiles, minReads = 10)
|
junctionFiles |
list of files with STAR junctions |
minReads |
minimum number of reads a junction requires to be kept |
GRanges object with junctions
Beth Signal
Other leafcutter splicing isoform creation:
alternativeIntronUsage()
,
leafcutterIntronsToExons()
,
makeNewLeafExonsUnanchored()
,
makeNewLeafExons()
1 2 3 | junction_files <- list.files(system.file("extdata","leaf_small",
package="GeneStructureTools"), full.names=TRUE, pattern=".junc")
leaf_junc <- readLeafcutterJunctions(junction_files)
|
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