readLeafcutterJunctions: Create junction ranges from STAR junction files
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Create junction ranges from STAR junction files
Usage
1
readLeafcutterJunctions(junctionFiles, minReads = 10)
Arguments
junctionFiles
list of files with STAR junctions
minReads
minimum number of reads a junction requires to be kept
Value
GRanges object with junctions
Author(s)
Beth Signal
See Also
Other leafcutter splicing isoform creation:
alternativeIntronUsage(),
leafcutterIntronsToExons(),
makeNewLeafExonsUnanchored(),
makeNewLeafExons()
Examples
1
2
3
junction_files <- list.files(system.file("extdata","leaf_small",
package="GeneStructureTools"), full.names=TRUE, pattern=".junc")
leaf_junc <- readLeafcutterJunctions(junction_files)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Create junction ranges from STAR junction files
Usage
1 | readLeafcutterJunctions(junctionFiles, minReads = 10)
|
Arguments
junctionFiles |
list of files with STAR junctions |
minReads |
minimum number of reads a junction requires to be kept |
Value
GRanges object with junctions
Author(s)
Beth Signal
See Also
Other leafcutter splicing isoform creation:
alternativeIntronUsage(),
leafcutterIntronsToExons(),
makeNewLeafExonsUnanchored(),
makeNewLeafExons()
Examples
1 2 3 | junction_files <- list.files(system.file("extdata","leaf_small",
package="GeneStructureTools"), full.names=TRUE, pattern=".junc")
leaf_junc <- readLeafcutterJunctions(junction_files)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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