Files in betsig/GeneStructureTools
Tools for spliced gene structure manipulation and analysis

.Rbuildignore
.gitignore
DESCRIPTION
GeneStructureTools.Rproj
LICENSE
NAMESPACE
R/AltSplicingJunctionSupported.R R/ExonSkipping.R R/IntronRetention.R R/OverlapFunctions.R R/UTR2UTR53.R R/compareTranscripts.R R/longestORF.R R/plotGvisTracks.R R/quickAnalysis.R R/readWhippetFiles.R
R/sysdata.rda
README.md
inst/extdata/dexseq_results.small.txt
inst/extdata/example_gtf.gtf
inst/extdata/gencode.vM14.annotation.dexseq.small.gtf
inst/extdata/gencode.vM14.annotation.small.gtf
inst/extdata/gencode.vM14.neurl1a.gtf
inst/extdata/whippet/example_01_v_02.diff.gz
inst/extdata/whippet/example_A01.jnc.gz
inst/extdata/whippet/example_A01.psi.gz
inst/extdata/whippet/example_A02.jnc.gz
inst/extdata/whippet/example_A02.psi.gz
inst/extdata/whippet/example_B01.jnc.gz
inst/extdata/whippet/example_B01.psi.gz
inst/extdata/whippet/example_B02.jnc.gz
inst/extdata/whippet/example_B02.psi.gz
man/DEXSeqIdsToGeneIds.Rd man/UTR2UTR53.Rd man/addBroadTypes.Rd man/addIntronInTranscript.Rd man/annotateGeneModel.Rd man/attrChangeAltSpliced.Rd man/cumsumANDpad.Rd man/filterGtfOverlap.Rd man/filterSignificantWhippetEvents.Rd man/findDEXexonType.Rd man/findExonContainingTranscripts.Rd man/findIntronContainingTranscripts.Rd man/findJunctionPairs.Rd man/formatJunctions.Rd man/formatWhippetEvents.Rd man/getOrfs.Rd man/makeGeneModel.Rd man/maxLocation.Rd man/orfDiff.Rd man/orfSimilarity.Rd man/overlapTypes.Rd man/readWhippetDIFFfiles.Rd man/readWhippetJNCfiles.Rd man/readWhippetPSIfiles.Rd man/removeDuplicateTranscripts.Rd man/removeVersion.Rd man/reorderExonNumbers.Rd man/replaceJunction.Rd man/skipExonInTranscript.Rd man/summariseExonTypes.Rd man/transcriptChangeSummary.Rd man/whippetTranscriptChangeSummary.Rd
vignettes/HexLogoGeneStructureTools.png
vignettes/Vignette.Rmd
vignettes/Vignette.html
vignettes/whippetAltAceDon.png
vignettes/whippetAltFirstLast.png
vignettes/whippetExonSkip.png
vignettes/whippetIntronRetention.png
betsig/GeneStructureTools documentation built on Jan. 14, 2018, 9:09 a.m.