Description Usage Arguments Value Author(s) See Also Examples
View source: R/exonReformatting.R
reformat a exons GRanges with first/last annotations and force 'biotype' to 'type'
1 | reformatExons(exons)
|
exons |
reference exons GRanges |
reference exons GRanges
Beth Signal
Other rmats data processing:
altIntronRmats()
,
altSpliceSiteRmats()
,
annotateEventCoords()
,
annotateOverlapRmats()
,
betweenNumbers()
,
duplicateReference()
,
exonsToIntrons()
,
extractEvent()
,
filterRmatsEvents()
,
readRmatsDataSet()
,
removeDuplicatePairs()
,
removeExonsBetween()
,
rmatsTranscriptChangeSummary()
,
skipExonByJunction()
,
splitLongExons()
1 2 3 4 5 | gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
package = "GeneStructureTools"
))
exons <- gtf[gtf$type == "exon"]
exons.reformat <- reformatExons(exons)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.