reformatExons: reformat a exons GRanges with first/last annotations and...

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

reformat a exons GRanges with first/last annotations and force 'biotype' to 'type'

Usage

reformatExons(exons)

Arguments

exons

reference exons GRanges

Value

reference exons GRanges

Author(s)

Beth Signal

See Also

Other rmats data processing: altIntronRmats(), altSpliceSiteRmats(), annotateEventCoords(), annotateOverlapRmats(), betweenNumbers(), duplicateReference(), exonsToIntrons(), extractEvent(), filterRmatsEvents(), readRmatsDataSet(), removeDuplicatePairs(), removeExonsBetween(), rmatsTranscriptChangeSummary(), skipExonByJunction(), splitLongExons()

Examples

gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
    package = "GeneStructureTools"
))
exons <- gtf[gtf$type == "exon"]
exons.reformat <- reformatExons(exons)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.