maxLocation: Find the largest distance between two vectors of numbers...

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Find the largest distance between two vectors of numbers Helper function for get_orfs

Usage

maxLocation(startSite, stopSite, longest = 1)

Arguments

startSite	vector of start sites - i.e Met amino acid positions
stopSite	vector of stop sites - i.e Stop (*) amino acid positions
longest	which pair to return (1 = longest pair, 2= 2nd longest pair etc.)

Value

sequential start site and end site with the greatest difference

Author(s)

Beth Signal

See Also

Other ORF annotation: getOrfs(), getUOrfs(), orfSimilarity()

Examples

starts <- c(1, 10, 15, 25)
stops <- c(4, 16, 50, 55)
# longest start site = 25, longest stop site = 50
maxLocation(starts, stops, longest = 1)
starts <- c(1, 10, 15, 25)
stops <- c(4, 14, 50, 55)
# longest start site = 15, longest stop site = 50
maxLocation(starts, stops, longest = 1)
# 2nd longest start site = 10, 2nd longest stop site = 14
maxLocation(starts, stops, longest = 2)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.