API for betsig/GeneStructureTools
Tools for spliced gene structure manipulation and analysis

Global functions
DEXSeqIdsToGeneIds Man page Source code
UTR2UTR53 Man page Source code
addBroadTypes Man page Source code
addIntronInTranscript Man page Source code
addSets Man page Source code
alternativeIntronUsage Man page Source code
annotateGeneModel Man page Source code
attrChangeAltSpliced Man page Source code
coordinates Man page
coordinates,whippetDataSet-method Man page
cumsumANDpad Man page Source code
diffSplicingResults Man page
diffSplicingResults,whippetDataSet-method Man page
exonsToTranscripts Man page Source code
filterGtfOverlap Man page Source code
filterWhippetEvents Man page Source code
findDEXexonType Man page Source code
findExonContainingTranscripts Man page Source code
findIntronContainingTranscripts Man page Source code
findJunctionPairs Man page Source code
formatWhippetEvents Man page Source code
getOrfs Man page Source code
getUOrfs Man page Source code
junctions Man page
junctions,whippetDataSet-method Man page
leafcutterTranscriptChangeSummary Man page Source code
makeGeneModel Man page Source code
maxLocation Man page Source code
orfDiff Man page Source code
orfSimilarity Man page Source code
overlapTypes Man page Source code
readCounts Man page
readCounts,whippetDataSet-method Man page
readWhippetDIFFfiles Man page Source code
readWhippetDataSet Man page Source code
readWhippetJNCfiles Man page Source code
readWhippetPSIfiles Man page Source code
removeDuplicateTranscripts Man page Source code
removeSameExon Man page Source code
removeVersion Man page Source code
reorderExonNumbers Man page Source code
replaceJunction Man page Source code
skipExonInTranscript Man page Source code
summariseExonTypes Man page Source code
transcriptChangeSummary Man page Source code
whippetDataSet-class Man page
whippetTranscriptChangeSummary Man page Source code
betsig/GeneStructureTools documentation built on March 27, 2018, 9:19 a.m.