filterIrfEvents: Filter out significant events from a irfDataSet

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Filter out significant events from a irfDataSet

Usage

filterIrfEvents(irfDataSet, FDR = 0.05, psiDelta = 0.1, idList = NA)

Arguments

irfDataSet	irfDataSet generated from readIrfDataSet()
FDR	maximum FDR required to call event as significant
psiDelta	minimum change in psi required to call an event as significant
idList	(optional) list of gene ids to filter for

Value

filtered irfDataSet

Author(s)

Beth Signal

See Also

Other IRFinder data processing: irfTranscriptChangeSummary(), readIrfDataSet()

Examples

irfinder_file <- list.files(system.file("extdata", "irf_small/", package = "GeneStructureTools"), full.names = TRUE)
irf <- readIrfDataSet(irfinder_file)
irf.filtered <- filterIrfEvents(irf, FDR = 0.01, psiDelta = 0.1)

# filter by gene id/name
irf.filtered <- filterIrfEvents(irf, idList = "Tmem208")

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.