coordinates-methods: Method coordinates
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Method coordinates
Usage
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coordinates(whippetDataSet)
## S4 method for signature 'whippetDataSet'
coordinates(whippetDataSet)
Arguments
whippetDataSet
whippetDataSet generated from readWhippetDataSet()
Value
whippet splicing event coordinates as a GRanges object
See Also
Other whippet data processing:
diffSplicingResults(),
filterWhippetEvents(),
formatWhippetEvents(),
junctions(),
readCounts(),
readWhippetDIFFfiles(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
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whippetFiles <- system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
)
wds <- readWhippetDataSet(whippetFiles)
coordinates <- coordinates(wds)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
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Description Usage Arguments Value See Also Examples
Description
Method coordinates
Usage
1 2 3 4 | coordinates(whippetDataSet)
## S4 method for signature 'whippetDataSet'
coordinates(whippetDataSet)
|
Arguments
whippetDataSet |
whippetDataSet generated from |
Value
whippet splicing event coordinates as a GRanges object
See Also
Other whippet data processing:
diffSplicingResults(),
filterWhippetEvents(),
formatWhippetEvents(),
junctions(),
readCounts(),
readWhippetDIFFfiles(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
1 2 3 4 5 6 | whippetFiles <- system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
)
wds <- readWhippetDataSet(whippetFiles)
coordinates <- coordinates(wds)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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