formatWhippetEvents: Format Whippet co-ordinates as a GRanges object
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/readWhippetFiles.R
Description
Format Whippet co-ordinates as a GRanges object
Usage
1
formatWhippetEvents(whippet)
Arguments
whippet
data.frame containing event location information.
May be generated by readWhippetDIFFfiles()
Value
GRanges object with events
Author(s)
Beth Signal
See Also
Other whippet data processing:
coordinates(),
diffSplicingResults(),
filterWhippetEvents(),
junctions(),
readCounts(),
readWhippetDIFFfiles(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
1
2
3
4
5
6
whippetFiles <- list.files(system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
whippetCoords <- formatWhippetEvents(whippetDiffSplice)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/readWhippetFiles.R
Description
Format Whippet co-ordinates as a GRanges object
Usage
1 | formatWhippetEvents(whippet)
|
Arguments
whippet |
data.frame containing event location information. May be generated by readWhippetDIFFfiles() |
Value
GRanges object with events
Author(s)
Beth Signal
See Also
Other whippet data processing:
coordinates(),
diffSplicingResults(),
filterWhippetEvents(),
junctions(),
readCounts(),
readWhippetDIFFfiles(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
1 2 3 4 5 6 | whippetFiles <- list.files(system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
whippetCoords <- formatWhippetEvents(whippetDiffSplice)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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