readRmatsDataSet: Import RMATS Turbo results files as a rmatsDataSet

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Import RMATS Turbo results files as a rmatsDataSet

Usage

readRmatsDataSet(filePath, type = "JC")

Arguments

filePath	path to RMATS differential splicing output files
type	type of counts to use. "JC" or "JCEC"

Value

rmatsDataSet

Author(s)

Beth Signal

See Also

Other rmats data processing: altIntronRmats(), altSpliceSiteRmats(), annotateEventCoords(), annotateOverlapRmats(), betweenNumbers(), duplicateReference(), exonsToIntrons(), extractEvent(), filterRmatsEvents(), reformatExons(), removeDuplicatePairs(), removeExonsBetween(), rmatsTranscriptChangeSummary(), skipExonByJunction(), splitLongExons()

Examples

rmats_filePath <- system.file("extdata", "rmats_small/", package = "GeneStructureTools")
rds <- readRmatsDataSet(rmats_filePath)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.