makeGeneModel: Convert GRanges gene model to data.frame for visualisation...
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/plotGvisTracks.R
Description
Convert GRanges gene model to data.frame for visualisation with Gviz
Usage
1
makeGeneModel(transcript)
Arguments
transcript
GRanges of gene model to be visualised
Value
data.frame of a gene model for visualisation
Author(s)
Beth Signal
See Also
Other Gviz gene structure visualisation:
annotateGeneModel()
Examples
1
2
3
4
5
gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
package = "GeneStructureTools"
))
transcript <- gtf[gtf$type == "exon" & gtf$gene_name == "Tmem208"]
geneModel <- makeGeneModel(transcript)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/plotGvisTracks.R
Description
Convert GRanges gene model to data.frame for visualisation with Gviz
Usage
1 | makeGeneModel(transcript)
|
Arguments
transcript |
GRanges of gene model to be visualised |
Value
data.frame of a gene model for visualisation
Author(s)
Beth Signal
See Also
Other Gviz gene structure visualisation:
annotateGeneModel()
Examples
1 2 3 4 5 | gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
package = "GeneStructureTools"
))
transcript <- gtf[gtf$type == "exon" & gtf$gene_name == "Tmem208"]
geneModel <- makeGeneModel(transcript)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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