makeNewLeafExons: Create new exon ranges for a cryptic splice junction

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Create new exon ranges for a cryptic splice junction

Usage

makeNewLeafExons(altIntronLocs, junctionRanges, clusterExons, splice.type)

Arguments

clusterExons	GRanges of annotated exons from the target gene
splice.type	which end of the junciton is cryptic? 3 or 5.
junctionGRanges	GRanges of splice junction (must be intron version)

Value

GRanges object with new exons

Author(s)

Beth Signal

See Also

Other leafcutter splicing isoform creation: alternativeIntronUsage(), leafcutterIntronsToExons(), makeNewLeafExonsUnanchored(), readLeafcutterJunctions()

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.