exonsToIntrons: Generate a introns Granges from an exons Granges

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Generate a introns Granges from an exons Granges

Usage

exonsToIntrons(exons)

Arguments

exons

reference exons GRanges

Value

reference introns GRanges

Author(s)

Beth Signal

See Also

Other rmats data processing: altIntronRmats(), altSpliceSiteRmats(), annotateEventCoords(), annotateOverlapRmats(), betweenNumbers(), duplicateReference(), extractEvent(), filterRmatsEvents(), readRmatsDataSet(), reformatExons(), removeDuplicatePairs(), removeExonsBetween(), rmatsTranscriptChangeSummary(), skipExonByJunction(), splitLongExons()

Examples

gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
    package = "GeneStructureTools"
))
exons <- gtf[gtf$type == "exon"]
introns <- exonsToIntrons(exons)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.