readWhippetDIFFfiles: Read in a list of whippet .diff.gz files and format as a...
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/readWhippetFiles.R
Description
Read in a list of whippet .diff.gz files and format as a data.frame
Usage
1
Arguments
files
vector of *.diff.gz file names
Value
data.frame with junction counts for all files
Author(s)
Beth Signal
See Also
Other whippet data processing:
coordinates(),
diffSplicingResults(),
filterWhippetEvents(),
formatWhippetEvents(),
junctions(),
readCounts(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
1
2
3
4
5
whippetFiles <- list.files(system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
View source: R/readWhippetFiles.R
Description
Read in a list of whippet .diff.gz files and format as a data.frame
Usage
1 |
Arguments
files |
vector of *.diff.gz file names |
Value
data.frame with junction counts for all files
Author(s)
Beth Signal
See Also
Other whippet data processing:
coordinates(),
diffSplicingResults(),
filterWhippetEvents(),
formatWhippetEvents(),
junctions(),
readCounts(),
readWhippetDataSet(),
readWhippetJNCfiles(),
readWhippetPSIfiles(),
whippetTranscriptChangeSummary()
Examples
1 2 3 4 5 | whippetFiles <- list.files(system.file("extdata", "whippet_small/",
package = "GeneStructureTools"
), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.