extractEvent-methods: Method extractEvent

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Method extractEvent

Usage

extractEvent(rmatsDataSet, eventType)

## S4 method for signature 'rmatsDataSet'
extractEvent(rmatsDataSet, eventType)

Arguments

rmatsDataSet	rmatsDataSet generated from readRmatsDataSet()
eventType	specific event type to extract results for. Must be SE/MXE/RI/A5SS/A3SS.

Value

differential splicing results data.frame (originally from a whippet .diff file)

See Also

Other rmats data processing: altIntronRmats(), altSpliceSiteRmats(), annotateEventCoords(), annotateOverlapRmats(), betweenNumbers(), duplicateReference(), exonsToIntrons(), filterRmatsEvents(), readRmatsDataSet(), reformatExons(), removeDuplicatePairs(), removeExonsBetween(), rmatsTranscriptChangeSummary(), skipExonByJunction(), splitLongExons()

Examples

rmats_directory <- system.file("extdata", "rmats_small/",
    package = "GeneStructureTools"
)
rds <- readRmatsDataSet(rmats_directory)
rds.SE <- extractEvent(rds, "SE")

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.