readWhippetJNCfiles: Read in a list of whippet .jnc.gz files and format as a...

In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description

Read in a list of whippet .jnc.gz files and format as a GRanges object

Usage

readWhippetJNCfiles(files, minCount = 0)

Arguments

files	vector of *.jnc.gz file names
minCount	minimum number of counts a junction needs to be kept.

Value

GRanges object with junctions

Author(s)

Beth Signal

See Also

Other whippet data processing: coordinates(), diffSplicingResults(), filterWhippetEvents(), formatWhippetEvents(), junctions(), readCounts(), readWhippetDIFFfiles(), readWhippetDataSet(), readWhippetPSIfiles(), whippetTranscriptChangeSummary()

Examples

whippetFiles <- list.files(system.file("extdata", "whippet_small/",
    package = "GeneStructureTools"
), full.names = TRUE)
jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
whippetJNC <- readWhippetJNCfiles(jncFiles)

betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.