reorderExonNumbers: Reorder the exon numbers in a gtf annotation
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Reorder the exon numbers in a gtf annotation
Usage
1
reorderExonNumbers(exons, by = "transcript_id")
Arguments
exons
GRanges object made from a GTF with ONLY exon annotations
(no gene, transcript, CDS etc.)
by
what column are the transcripts grouped by?
Value
The same input GRanges, but with exon numbers reordered.
Author(s)
Beth Signal
See Also
Other gtf manipulation:
UTR2UTR53(),
exonsToTranscripts(),
removeDuplicateTranscripts(),
removeSameExon()
Examples
1
2
3
gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf", package = "GeneStructureTools"))
exons <- gtf[gtf$type == "exon"]
exons <- reorderExonNumbers(exons)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Reorder the exon numbers in a gtf annotation
Usage
1 | reorderExonNumbers(exons, by = "transcript_id")
|
Arguments
exons |
GRanges object made from a GTF with ONLY exon annotations (no gene, transcript, CDS etc.) |
by |
what column are the transcripts grouped by? |
Value
The same input GRanges, but with exon numbers reordered.
Author(s)
Beth Signal
See Also
Other gtf manipulation:
UTR2UTR53(),
exonsToTranscripts(),
removeDuplicateTranscripts(),
removeSameExon()
Examples
1 2 3 | gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf", package = "GeneStructureTools"))
exons <- gtf[gtf$type == "exon"]
exons <- reorderExonNumbers(exons)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.