removeSameExon: Remove exon duplicates
In betsig/GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Removes structural duplicates of exons in a GRanges object
Usage
1
removeSameExon(exons)
Arguments
exons
GRanges object with exons
Value
GRanges object with unique exons
Author(s)
Beth Signal
See Also
Other gtf manipulation:
UTR2UTR53(),
exonsToTranscripts(),
removeDuplicateTranscripts(),
reorderExonNumbers()
Examples
1
2
3
4
5
6
7
8
gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
package = "GeneStructureTools"
))
exons <- gtf[gtf$type == "exon"]
exons.duplicated <- c(exons[1:4], exons[1:4])
length(exons.duplicated)
exons.deduplicated <- removeSameExon(exons.duplicated)
length(exons.deduplicated)
betsig/GeneStructureTools documentation built on March 31, 2021, 4:43 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Removes structural duplicates of exons in a GRanges object
Usage
1 | removeSameExon(exons)
|
Arguments
exons |
GRanges object with exons |
Value
GRanges object with unique exons
Author(s)
Beth Signal
See Also
Other gtf manipulation:
UTR2UTR53(),
exonsToTranscripts(),
removeDuplicateTranscripts(),
reorderExonNumbers()
Examples
1 2 3 4 5 6 7 8 | gtf <- rtracklayer::import(system.file("extdata", "gencode.vM25.small.gtf",
package = "GeneStructureTools"
))
exons <- gtf[gtf$type == "exon"]
exons.duplicated <- c(exons[1:4], exons[1:4])
length(exons.duplicated)
exons.deduplicated <- removeSameExon(exons.duplicated)
length(exons.deduplicated)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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