Description Usage Arguments Value
Based on pre-computed areas and band assignments (may be one band, depending on how area was calculated), calculate densities for a set of markers in each band
1 2 3 |
dat |
tibble containing marker counts |
areas |
tibble containing area by band |
bandAssignments |
tibble containing band assignments for each cell |
markerSet |
vector of markers for which density should be calculated |
pad |
number in microns, amount to trim from border of FOV |
funcMarker |
functional marker for which to calculate density; default=NULL |
sortByMarker |
sort data by density of this marker; default=NULL |
writeCSVfiles |
logical; write density to csv files; default=FALSE |
outDir |
logical; if writeCSVfiles is TRUE, write them to this directory |
statsByBand |
logical; calculate density by interval bands |
tibble containing densities for each marker type
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