computeBandAreasMC: Compute band areas for each interface bin

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Given a list of distances from a tumor boundary, or 'interface bins', calculate area for each bin using a sobol grid

Usage

computeBandAreasMC(tumorBoundariesList, bb, interfaceBins, nGrid = 100,
  maxSeg = 1000, exclusionB)

Arguments

tumorBoundariesList	a list where each element is a tibble containing tumor boundaries returned from readHaloAnnotations()
bb	a list containing X0,X1,Y0,Y1 representing the boundary of the trimmed FOV
interfaceBins	vector of distances (integers) that define each band; default = (-20:20)*10
nGrid	number of random points to use for area calculations; default=100
maxSeg	maximum segments to divide long boundary segments into; default=1000
exclusionsB	a list where each element is a tibble containing exclusion boundaries returned from readHaloAnnotations()

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.