Description Usage Arguments Value
Create and store all infiltration plots in a list to be printed later
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den |
tibble with columns for Sample,SPOT,Band,Counts,Density |
bandWidth |
width of each band around tumor interface |
config |
parsed marker config (return value from getMarkerConfig()) |
yScaleConsistency |
possible values: "population", "all", or "sample" indicating which subset of values to use to set maximum for all plots |
absoluteDensity |
logical indicating whether to plot density values on absolute scale (default=TRUE) |
densityPercentage |
logical indicating whether to plot density percentages (default=TRUE) |
byFOV |
logical indicating whether to generate plots for each individual FOV (default=TRUE) |
summarize |
logical indicating whether to generate summary plots of total band densities (ALL FOVs; default=TRUE) |
stacked |
logical indicating whether to generate plots of all cell types for a single marker set in a stacked bar chart (default=TRUE) |
sampleOrder |
vector of sample names in order they should appear on plots |
infiltrationAreas |
area data for each sample/spot/band |
indivPopulations |
plot populations individually; default=TRUE; if set to FALSE, ONLY stacked plots will be created |
list of all plots
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