calculateInfiltrationDensity: Calculate density of set of markers (marker combinations)

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Based on pre-computed areas and band assignments (may be one band, depending on how area was calculated), calculate densities for a set of markers in each band

Usage

calculateInfiltrationDensity(areas, bandAssignments, markerSet, outFile,
  writeCSVfiles = TRUE)

Arguments

areas	tibble containing area by band
bandAssignments	tibble containing band assignments for each cell
markerSet	vector of markers for which density should be calculated
writeCSVfiles	logical; write density to csv files; default=FALSE
outDir	logical; if writeCSVfiles is TRUE, write them to this directory

Value

tibble containing densities for each marker type

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.