cellDive.getAllBoundaryAnnotations: Load and/or parse all Halo boundary annotations

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

If boundary annotations have already been parsed and saved to *.rda file, load file. Otherwise, parse all annotations, save to *.rda file and return parsed annotations.

Usage

cellDive.getAllBoundaryAnnotations(pp, sampAnn = NULL)

Arguments

pp	list of all project parameters, from which it will be determined whether annotations have been previously parsed. List must include annotations_dirs and/or annotations_file parameters.
sampAnn	parsed sample annotations; only required if pp$annotations_file is NULL or the file does not exist/is empty

Value

list containing three values: (1) dat = list of all Halo boundary annotations organized by sample and FOV (2) updated = logical indicating whether annotations were just parsed (TRUE) or previously parsed (FALSE) (3) pp = updated list of project parameters

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.