getBandAssignments: Get counts of cells that fall within given distances of tumor...
In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data
View source: R/melanoma_spatial.R
Description
Given a set of interface bands, or set distances from a tumor
boundary, count the numbers of cells that fall within those bands
Usage
1
getBandAssignments(ds, bb, allBoundaries, interfaceBins = (-36:36) * 10)
Arguments
ds
a tibble containing data for one FOV
bb
a list containing X0,X1,Y0,Y1 representing the boundary
of the trimmed FOV
allBoundaries
a list returned from readHaloAnnotations
interfaceBins
vector of distances (integers) that define each band; default = (-20:20)*10
caitlinjones/halo documentation built on May 7, 2019, 8 a.m.
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View source: R/melanoma_spatial.R
Description
Given a set of interface bands, or set distances from a tumor boundary, count the numbers of cells that fall within those bands
Usage
1 | getBandAssignments(ds, bb, allBoundaries, interfaceBins = (-36:36) * 10)
|
Arguments
ds |
a tibble containing data for one FOV |
bb |
a list containing X0,X1,Y0,Y1 representing the boundary of the trimmed FOV |
allBoundaries |
a list returned from readHaloAnnotations |
interfaceBins |
vector of distances (integers) that define each band; default = (-20:20)*10 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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