Description Usage Arguments Details Value
View source: R/melanoma_spatial.R
Given an annotation file and halo infiltration data, compute tibble of Sample, FOV, Halo Version, MaxG, Band, Area, Halo
1 2 |
sample |
sample name |
fov |
FOV |
maxG |
maximum factor of 10 to use for generating random points on grid [ REWORD??? ] |
outDir |
if writeCSVfiles=TRUE, files will be written here |
bb |
a list containing X0,X1,Y0,Y1 representing the boundary of the trimmed FOV |
writeCSVfiles |
write lattice band area file in csv format; default=FALSE |
interfaceBins |
vector of distances (integers) that define each band; default = (-20:20)*10 |
aFile |
Halo boundary annotation file in XML format |
*NOTE: formerly computeBoundaryBinsLattice
tibble
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