cellDive.calculateTotalFOVarea: Calculate area of each entire FOV

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Generate a table of three columns: Sample, SPOT, Area

Usage

cellDive.calculateTotalFOVarea(allDat, pp, metaFiles, updatedExclusions,
  allHaloAnnotations = NULL, fovAreaPrefix = "")

Arguments

allDat	tibble of all Halo data
pp	list of all project parameters
metaFiles	vector of meta files
updatedExclusions	logical indicating whether exclusions were updated during current run of pipeline
allHaloAnnotations	list of parsed Halo annotations organized by sample and then FOV
fovAreaPrefix	prefix added to 'fov_area_file' and/or 'fov_area_dir' in names of pp list (leave "" if no prefix)

Value

list of three items: (1) dat = tibble of three columns: Sample, SPOT, Area (2) updated = logical indicating whether a new area table was generated (TRUE) or an old one was loaded (FALSE) (3) pp = updated list of project parameters

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.