cellDive.fillInMarkerComboInterpretations: Add columns Cell_Type and Cell_Subtype to marker counts file
In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data
Description
Usage
Arguments
Value
Description
Given a table where the first three columns = Markers, Cell_Type, and Cell_Subtype and Cell_Type/Subtype are blank, and the remaining columns contain total counts for each marker combination in a single sample, fill in blank columns using meta data files
Usage
1
2
cellDive.fillInMarkerComboInterpretations(xlfile = NULL,
markerComboTable = NULL, outDir = NULL, allCellTypes = NULL)
Arguments
xlfile
XLSX file containing table described above; default=NULL; if not specified, markerComboTable must be given
markerComboTable
marker combination table returned from cellDive.getMarkerCombinationTable(); if not specified, must provide xlfile
outDir
directory where xlsx file should be saved
allCellTypes
parsed cell types as returned by flattenMetaData()
Value
marker combo table with columns Cell_Type and Cell_Subtype filled in
caitlinjones/halo documentation built on May 7, 2019, 8 a.m.
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Description Usage Arguments Value
Description
Given a table where the first three columns = Markers, Cell_Type, and Cell_Subtype and Cell_Type/Subtype are blank, and the remaining columns contain total counts for each marker combination in a single sample, fill in blank columns using meta data files
Usage
1 2 | cellDive.fillInMarkerComboInterpretations(xlfile = NULL,
markerComboTable = NULL, outDir = NULL, allCellTypes = NULL)
|
Arguments
xlfile |
XLSX file containing table described above; default=NULL; if not specified, markerComboTable must be given |
markerComboTable |
marker combination table returned from cellDive.getMarkerCombinationTable(); if not specified, must provide xlfile |
outDir |
directory where xlsx file should be saved |
allCellTypes |
parsed cell types as returned by flattenMetaData() |
Value
marker combo table with columns Cell_Type and Cell_Subtype filled in
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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