Description Usage Arguments Value
Generate table of four columns: Sample, SPOT, Counts, Density
1 2 | cellDive.calculateTotalFOVdensity(allDat, markerConfig, fovAreas, pp,
updatedFOVarea, updatedComboTable, fovDensityPrefix = "")
|
allDat |
all Halo data |
markerConfig |
tibble of parsed marker configuration (value returned from getMarkerConfig) |
fovAreas |
tibble of areas for each FOV in each Sample (value returned from cellDive.calculateTotalFOVarea) |
pp |
list of all project parameters |
updatedComboTable |
logical indicating whether combo table was updated during current pipeline run |
fovDensityPrefix |
prefix added to prefix added to 'fov_density_file' and/or 'fov_density_dir' in names of pp list (leave "" if no prefix) |
updatedFOVareas |
logical indicating whether FOV areas were updated during current pipeline run |
list of three items: (1) dat = tibble of three columns: Sample, SPOT, Count, Density (2) updated = logical indicating whether a new density table was generated (TRUE) or an old one was loaded (FALSE) (3) pp = updated list of project parameters
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