cellDive.markExclusions: Mark cells in *.rda file to be excluded from analysis
In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data
Description
Usage
Arguments
Value
Description
Add 'EXCLUDE' column to each sample tibble indicating reason(s) why a cell should
be excluded from analysis. Possible reasons include:
(1) cell falls outside padding border
(2) lab determined FOV and/or Marker should be excluded for technical reasons
(3) drift/loss percentage is above maximum allowed value
(4) cell was determined by Halo to fall inside an area to be excluded
Write updated tibble to *.rda file with "_Excl.rda" appended to original file name
Usage
1
cellDive.markExclusions(projectParams)
Arguments
projectParams
a list of parameters for entire project including meta directory/files, drift directory, halo annotations directories, and raw data directory
Value
updated projectParams including data directory where new *.rda files are saved
caitlinjones/halo documentation built on May 7, 2019, 8 a.m.
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Description Usage Arguments Value
Description
Add 'EXCLUDE' column to each sample tibble indicating reason(s) why a cell should be excluded from analysis. Possible reasons include: (1) cell falls outside padding border (2) lab determined FOV and/or Marker should be excluded for technical reasons (3) drift/loss percentage is above maximum allowed value (4) cell was determined by Halo to fall inside an area to be excluded Write updated tibble to *.rda file with "_Excl.rda" appended to original file name
Usage
1 | cellDive.markExclusions(projectParams)
|
Arguments
projectParams |
a list of parameters for entire project including meta directory/files, drift directory, halo annotations directories, and raw data directory |
Value
updated projectParams including data directory where new *.rda files are saved
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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