Description Usage Arguments Value
Add 'EXCLUDE' column to each sample tibble indicating reason(s) why a cell should be excluded from analysis. Possible reasons include: (1) cell falls outside padding border (2) lab determined FOV and/or Marker should be excluded for technical reasons (3) drift/loss percentage is above maximum allowed value (4) cell was determined by Halo to fall inside an area to be excluded Write updated tibble to *.rda file with "_Excl.rda" appended to original file name
1 | cellDive.markExclusions(projectParams)
|
projectParams |
a list of parameters for entire project including meta directory/files, drift directory, halo annotations directories, and raw data directory |
updated projectParams including data directory where new *.rda files are saved
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