Description Usage Arguments Value
Create and store all infiltration plots in a list to be printed later
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den |
tibble with columns for Sample,SPOT,Band,Counts,Density |
config |
parsed marker config (return value from getMarkerConfig()) |
indivPopulations |
plot populations individually; default=TRUE; if set to FALSE, ONLY stacked plots will be created |
absoluteDensity |
logical indicating whether to plot density values on absolute scale (default=TRUE) |
densityPercentage |
logical indicating whether to plot density percentages (default=TRUE) |
summarize |
logical indicating whether to generate summary plots of total band densities (ALL FOVs; default=TRUE) |
stacked |
logical indicating whether to generate plots of all cell types for a single marker set in a stacked bar chart (default=TRUE) |
fovAreas |
area data for each sample/spot |
forceStack |
force stacking of cell types even if they appear to be unstackable |
yMax |
maximum y value for all plots |
annotationCols |
vector of column names to use for annotation |
sampleOrder |
vector of sample names in order they should appear on plots |
list of all plots
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