Files in compbiomed/celda

CEllular Latent Dirichlet Allocation

CONDUCT.md R/RcppExports.R R/StateHeatmap.R R/celdaGridSearch.R R/celda_C.R R/celda_CG.R R/celda_G.R R/celda_functions.R R/celda_heatmap.R R/data.R R/decon.R R/diffExp.R R/feature_selection.R R/initialize_clusters.R R/matrixSums.R R/model_performance.R R/plot_dr.R R/s3_generics.R R/semi_pheatmap.R R/split_clusters.R README.md man/DeconX.Rd man/available_models.Rd man/celda.C.mod.Rd man/celda.C.sim.Rd man/celda.CG.grid.search.res.Rd man/celda.CG.mod.Rd man/celda.CG.sim.Rd man/celda.G.mod.Rd man/celda.G.sim.Rd man/celda.Rd man/celdaGridSearch.Rd man/celdaHeatmap.Rd man/celdaHeatmap.celda_C.Rd man/celdaHeatmap.celda_CG.Rd man/celdaHeatmap.celda_G.Rd man/celdaProbabilityMap.Rd man/celdaProbabilityMap.celda_C.Rd man/celdaProbabilityMap.celda_CG.Rd man/celdaTsne.Rd man/celdaTsne.celda_C.Rd man/celdaTsne.celda_CG.Rd man/celdaTsne.celda_G.Rd man/celda_C.Rd man/celda_CG.Rd man/celda_G.Rd man/clusterProbability.Rd man/clusterProbability.celda_C.Rd man/clusterProbability.celda_CG.Rd man/clusterProbability.celda_G.Rd man/compareCountMatrix.Rd man/completeLogLikelihood.Rd man/contamination.sim.Rd man/differentialExpression.Rd man/distinct_colors.Rd man/eigenMatMultInt.Rd man/factorizeMatrix.Rd man/factorizeMatrix.celda_C.Rd man/factorizeMatrix.celda_CG.Rd man/factorizeMatrix.celda_G.Rd man/fastNormProp.Rd man/fastNormPropLog.Rd man/fastNormPropSqrt.Rd man/featureModuleLookup.Rd man/featureModuleLookup.celda_C.Rd man/featureModuleLookup.celda_CG.Rd man/featureModuleLookup.celda_G.Rd man/featureModuleTable.Rd man/finalLogLikelihood.Rd man/logLikelihood.Rd man/logLikelihood.celda_C.Rd man/logLikelihood.celda_CG.Rd man/logLikelihood.celda_G.Rd man/moduleHeatmap.Rd man/normalizeCounts.Rd man/perplexity.Rd man/perplexity.celda_C.Rd man/perplexity.celda_CG.Rd man/perplexity.celda_G.Rd man/plotDimReduceCluster.Rd man/plotDimReduceFeature.Rd man/plotDimReduceGrid.Rd man/plotDimReduceModule.Rd man/plotGridSearchPerplexity.Rd man/plotGridSearchPerplexity.celda_C.Rd man/plotGridSearchPerplexity.celda_CG.Rd man/plotGridSearchPerplexity.celda_G.Rd man/plotHeatmap.Rd man/recodeClusterY.Rd man/recodeClusterZ.Rd man/resamplePerplexity.Rd man/runParams.Rd man/sample.cells.Rd man/selectBestModel.Rd man/semi_pheatmap.Rd man/simulateCells.Rd man/simulateCells.celda_C.Rd man/simulateCells.celda_CG.Rd man/simulateCells.celda_G.Rd man/simulateObservedMatrix.Rd man/subsetCeldaList.Rd man/topRank.Rd man/violinPlot.Rd tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test-celda-functions.R tests/testthat/test-celda_C.R tests/testthat/test-celda_CG.R tests/testthat/test-celda_G.R tests/testthat/test-decon.R tests/testthat/test-intialize_cluster.R tests/testthat/test-linter.R tests/testthat/test-matrixSums.R vignettes/celda-analysis.Rmd