Files in hms-dbmi/crestree
Analysis of branching branching trajectories from single-cell data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/bifurcation.functions.R
R/crest.R
R/crestree.functions.R
README.md
crestree.Rproj
data/crest.rda
man/activation.fork.Rd
man/activation.statistics.Rd
man/activity.lasso.Rd
man/bootstrap.ppt.Rd
man/branch.specific.genes.Rd
man/classify.genes.Rd
man/cleanup.branches.Rd
man/cor.mat.Rd
man/corEvol.Rd
man/corMatrix.Rd
man/corMatrixC.Rd
man/crest.Rd
man/decompose.Rd
man/euclidean.mat.Rd
man/extract.subtree.Rd
man/fig.cells.Rd
man/fig.cors.Rd
man/fit.associated.genes.Rd
man/fit.ts.Rd
man/fork.pt.Rd
man/inclusion.stat.Rd
man/lambda.explore.Rd
man/loc.opt.Rd
man/matWVCorr.Rd
man/mppt.tree.Rd
man/onset.Rd
man/onset.est.Rd
man/plotppt.Rd
man/plotpptl.Rd
man/ppt.tree.Rd
man/project.cells.onto.ppt.Rd
man/setroot.Rd
man/show.gene.inclusion.Rd
man/show.inclusion.summary.Rd
man/sig.explore.Rd
man/slide.cells.Rd
man/slide.cors.Rd
man/switchPoint.Rd
man/synchro.Rd
man/synchro.path.Rd
man/test.associated.genes.Rd
man/test.fork.genes.Rd
man/visualise.clusters.Rd
man/visualise.trajectory.Rd
man/visualize.synchro.Rd
man/wcr.Rd
pagoda_call/pagoda_call.R
pagoda_call/pagoda_call.functions.R
src/.gitignore
src/RcppExports.cpp
src/functions.cpp
vignettes/.gitignore
vignettes/bifurcation_point.Rmd
vignettes/bifurcation_point.md
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vignettes/tree_guide.Rmd
vignettes/tree_guide.md
