API for jweile/tileseqMave
TileSeq MAVE Analysis pipeline

Global functions
.onAttach	Man page Source code
adhocLogPhiSD	Man page Source code
adjustTableDepth	Man page Source code
analyzeComplexity	Man page
analyzeLegacyTileseqCounts	Man page Source code
biasCorrection	Man page Source code
bnl	Man page Source code
buildJointTable	Man page Source code
buildPlotMatrix	Man page
buildSimplifiedMarginal	Man page Source code
calcDepthDrops	Man page Source code
calcEnrichment	Man page Source code
calcPhi	Man page Source code
calcPhiBootstrap	Source code
calculateFits	Man page Source code
charProfile	Man page Source code
checkCSV	Man page Source code
checkPivots	Source code
codonAgreement	Man page
collapseByAA	Man page Source code
countAttributes	Man page Source code
coverageSubmap	Man page
csvParam2Json	Man page Source code
drawComplexity	Man page
drawCoverageLegend	Man page
drawCoverageMap	Man page
drawDistributions	Man page Source code
drawNucleotideBias	Man page Source code
drawPositionalDepth	Man page Source code
dropoutAnalysis	Man page Source code
enactScale	Man page Source code
errorProfile	Man page
expectedError	Man page Source code
exportExperiment	Man page Source code
exportRawAssay	Man page Source code
exportSeqSample	Man page Source code
filterBreakdown	Source code
filterProgression	Man page Source code
filterVariants	Man page Source code
findQuads	Man page Source code
findRuns	Man page
fit.cv.model	Man page Source code
floor0	Man page Source code
flooring	Man page Source code
flourSim	Source code
fluorScore	Man page Source code
getNonselectFor	Man page Source code
getNonselects	Man page Source code
getNsConditions	Man page Source code
getPivotOverrides	Man page Source code
getSelects	Man page Source code
getTimepointsFor	Man page Source code
getWTControlFor	Man page Source code
getWTReps	Man page Source code
inferTiles	Man page Source code
join.datapoints	Man page Source code
joinRawInputs	Man page Source code
latestSubDir	Man page Source code
legacyCountConverter	Man page Source code
libraryQC	Man page Source code
libraryQCLegacy	Man page
log.sd	Man page Source code
logInfo	Man page Source code
logPhiBias	Man page Source code
logVersion	Man page Source code
logWarn	Man page Source code
mavedbCountExport	Man page Source code
mean.sd.count	Man page Source code
mut_breakdown	Man page
nucleotideBiasAnalysis	Man page Source code
parseCountFile	Man page Source code
parseCoverageFile	Man page Source code
parseParameters	Man page Source code
pdftagger	Man page
plotCensus	Man page Source code
plotCoverageCurve	Man page
plotDepthDrops	Man page Source code
plotFrameshiftHotspot	Man page Source code
plotJackpotDiagnosis	Man page Source code
plotMutbreakdown	Man page
plotReplicateCorrelation	Man page Source code
plotSeqErrorRates	Man page Source code
plotWTCtrl	Man page
ratio.sd	Man page Source code
rawFilter	Man page Source code
rbeta2	Source code
reachableChanges	Man page Source code
regionCensus	Man page Source code
registerLogger	Man page Source code
regularizationQC	Man page Source code
regularizeRaw	Man page Source code
replicateCorrelation	Man page Source code
residualError	Man page Source code
runAlignments	Source code
runModelFits	Man page Source code
scaleScores	Man page Source code
scoreDistributions	Man page Source code
selectionQC	Man page Source code
simulateAssay	Man page Source code
simulateExperiment	Man page Source code
simulateFitness	Man page Source code
simulatePool	Man page Source code
simulateTileSeq	Man page Source code
slide	Man page Source code
splitCodonChanges	Man page Source code
startupMessage	Man page Source code
synNonDelta	Man page
tileCensus	Man page Source code
tilesInRegions	Man page Source code
validateParameters	Man page Source code