inst/extdata/bm_cb.md
In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation
NK
expressed: GNLY, GZMB
not expressed: CD8A, CD8B, CD3D
CD8+ T
expressed: CD8A, CD8B, CCL5
T
expressed: IL7R, CD3D
not expressed: CCL5
B
expressed: MS4A1
not expressed: UHRF1
Platelet
expressed: PPBP
Pre-B
expressed: CD79B
not expressed: UHRF1, MS4A1
CLP
expressed: UHRF1
not expressed: IL7R
Erythroblast
expressed: PRDX2
not expressed: IL7R, LST1
Progenitors
expressed: AVP, HPGDS, SPINK2
not expressed: PPBP
Dendritic Cell
expressed: LILRA4, FCGR3A, FCER1A, CD1C
not expressed: CD14
Plasma
expressed: MZB1
not expressed: CD79B, MS4A1
Monocytes
expressed: LST1, CD14
not expressed: FCER1A, FCGR3A
khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.
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NK expressed: GNLY, GZMB not expressed: CD8A, CD8B, CD3D
CD8+ T expressed: CD8A, CD8B, CCL5
T expressed: IL7R, CD3D not expressed: CCL5
B expressed: MS4A1 not expressed: UHRF1
Platelet expressed: PPBP
Pre-B expressed: CD79B not expressed: UHRF1, MS4A1
CLP expressed: UHRF1 not expressed: IL7R
Erythroblast expressed: PRDX2 not expressed: IL7R, LST1
Progenitors expressed: AVP, HPGDS, SPINK2 not expressed: PPBP
Dendritic Cell expressed: LILRA4, FCGR3A, FCER1A, CD1C not expressed: CD14
Plasma expressed: MZB1 not expressed: CD79B, MS4A1
Monocytes expressed: LST1, CD14 not expressed: FCER1A, FCGR3A
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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