markers/mca_lung.md

In khodosevichlab/CellAnnotatoR: Automated marker-based cell type annotation

Supp. figure 4B

AT2 expressed: Bex4, Sfta2

AT1 expressed: Cryab

Ciliated cells expressed: Aldh1a1, Cyp2f2

Interstitial macrophage expressed: Apoe, Pf4 not expressed: Trbc2

Alveolar macrophage expressed: Ear1, Ear2

T cells expressed: Cd8b1, Trbc2, Cxcr6

Natural killer cells expressed: Klra8, Nkg7 not expressed: Trbc2

Naaa DCs expressed: Naaa

Mgl2 DCs expressed: Mgl2

Plasmacytoid DCs expressed: Plac8

H2-M2 DCs expressed: Epsti1, H2-M2

Granulocytes expressed: Il1b, Il1r2

Endothelial expressed: Pecam1, Flt1, Chd5, Kdr

Fibroblasts expressed: Dcn, Acta2, Inmt

B cells expressed: Cd19, Ms4a1, Cd79a

Ig-producing B cell expressed: Igha, Jchain

Monocyte progenitor cell expressed: Ctsg, Mpo

Basophil expressed: Ccl3, Ccl4

khodosevichlab/CellAnnotatoR documentation built on June 29, 2022, 9:12 p.m.