Files in mckaylab/TSPmap
A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.Rmd
NEWS.md
R/.gitignore
R/MSTcallTSP.R
R/MSTgetGroup.R
R/TSPmap2distancedf.R
R/addMarkerNames.R
R/addRfs.R
R/addStampToFilename.R
R/autoClusterMST.R
R/autoMergeClusters.R
R/callConcorde.R
R/callLKH.R
R/capRFmat.R
R/checkNongroupEdges.R
R/cleanrfmat.R
R/computeHaldane.R
R/computeKosambi.R
R/computeRFmat.R
R/createMST.R
R/createMap.R
R/createTSPFile.R
R/distancedf2table.R
R/findZeros.R
R/findcuts.R
R/finddups.R
R/matchGroups.R
R/matchGroups2.R
R/pareMatrix.R
R/plotTSPsoln.R
R/processConcordeOutput.R
R/processLKHOutput.R
R/readfile.R
R/rearrangeGroup.R
R/removeMarkers.R
R/removedups.R
R/reorderMarkers.R
R/reverseCluster.R
R/reverseGroup.R
R/selectGroup.R
R/shiftTSPsoln.R
R/sortRFmatrix.R
R/tspOrder.R
R/tspOrder4TSPmap.R
R/writeOutput.R
R/writeRFmat.R
R/writeSortedRFmat.R
README.Rmd
TSPmap.Rproj
cran-comments.md
cran-comments.rmd
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/JM20Demo_rawinput.tsv
man/MSTcallTSP.Rd
man/MSTgetGroup.Rd
man/TSPmap2distancedf.Rd
man/addMarkerNames.Rd
man/addRfs.Rd
man/addStampToFilename.Rd
man/autoClusterMST.Rd
man/autoMergeClusters.Rd
man/callConcorde.Rd
man/callLKH.Rd
man/capRFmat.Rd
man/checkNongroupEdges.Rd
man/cleanrfmat.Rd
man/computeHaldane.Rd
man/computeKosambi.Rd
man/computeRFmat.Rd
man/createMST.Rd
man/createMap.Rd
man/createTSPFile.Rd
man/distancedf2table.Rd
man/findZeroes.Rd
man/findcuts.Rd
man/finddups.Rd
man/matchGroups.Rd
man/matchGroups2.Rd
man/pareMatrix.Rd
man/plotTSPsoln.Rd
man/processConcordeOutput.Rd
man/processLKHOutput.Rd
man/readFile.Rd
man/rearrangeGroup.Rd
man/removeMarkers.Rd
man/removedups.Rd
man/reorderMarkers.Rd
man/reverseCluster.Rd
man/reverseGroup.Rd
man/selectGroup.Rd
man/shiftTSPsoln.Rd
man/sortRFmatrix.Rd
man/tspOrder.Rd
man/writeOutput.Rd
man/writeRFmat.Rd
man/writeSortedRFmat.Rd
src/.DS_Store
src/.gitignore
src/TSPmap.so
src/rf.c
vignettes/.DS_Store
vignettes/tspOrder_tutorial.Rmd
vignettes/tspOrder_tutorial.pdf
vignettes/tsptempfile.sol
vignettes/vignette.R
vignettes/vignette.Rmd
