Files in mckaylab/TSPmap
A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.Rmd NEWS.md
R/.gitignore
R/MSTcallTSP.R R/MSTgetGroup.R R/TSPmap2distancedf.R R/addMarkerNames.R R/addRfs.R R/addStampToFilename.R R/autoClusterMST.R R/autoMergeClusters.R R/callConcorde.R R/callLKH.R R/capRFmat.R R/checkNongroupEdges.R R/cleanrfmat.R R/computeHaldane.R R/computeKosambi.R R/computeRFmat.R R/createMST.R R/createMap.R R/createTSPFile.R R/distancedf2table.R R/findZeros.R R/findcuts.R R/finddups.R R/matchGroups.R R/matchGroups2.R R/pareMatrix.R R/plotTSPsoln.R R/processConcordeOutput.R R/processLKHOutput.R R/readfile.R R/rearrangeGroup.R R/removeMarkers.R R/removedups.R R/reorderMarkers.R R/reverseCluster.R R/reverseGroup.R R/selectGroup.R R/shiftTSPsoln.R R/sortRFmatrix.R R/tspOrder.R R/tspOrder4TSPmap.R R/writeOutput.R R/writeRFmat.R R/writeSortedRFmat.R README.Rmd
TSPmap.Rproj
cran-comments.md cran-comments.rmd
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/JM20Demo_rawinput.tsv
man/MSTcallTSP.Rd man/MSTgetGroup.Rd man/TSPmap2distancedf.Rd man/addMarkerNames.Rd man/addRfs.Rd man/addStampToFilename.Rd man/autoClusterMST.Rd man/autoMergeClusters.Rd man/callConcorde.Rd man/callLKH.Rd man/capRFmat.Rd man/checkNongroupEdges.Rd man/cleanrfmat.Rd man/computeHaldane.Rd man/computeKosambi.Rd man/computeRFmat.Rd man/createMST.Rd man/createMap.Rd man/createTSPFile.Rd man/distancedf2table.Rd man/findZeroes.Rd man/findcuts.Rd man/finddups.Rd man/matchGroups.Rd man/matchGroups2.Rd man/pareMatrix.Rd man/plotTSPsoln.Rd man/processConcordeOutput.Rd man/processLKHOutput.Rd man/readFile.Rd man/rearrangeGroup.Rd man/removeMarkers.Rd man/removedups.Rd man/reorderMarkers.Rd man/reverseCluster.Rd man/reverseGroup.Rd man/selectGroup.Rd man/shiftTSPsoln.Rd man/sortRFmatrix.Rd man/tspOrder.Rd man/writeOutput.Rd man/writeRFmat.Rd man/writeSortedRFmat.Rd
src/.DS_Store
src/.gitignore
src/TSPmap.so
src/rf.c
vignettes/.DS_Store
vignettes/tspOrder_tutorial.Rmd vignettes/tspOrder_tutorial.pdf
vignettes/tsptempfile.sol
vignettes/vignette.R vignettes/vignette.Rmd
mckaylab/TSPmap documentation built on Oct. 19, 2018, 5:26 a.m.