reverseGroup: Reverse the order of markers in a group within a TSP solution...
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
Description
Reverse the order of markers in a group within a TSP solution object.
Usage
1
reverseGroup(markerData, cutpoints, groupIndex, rfmatrix)
Arguments
markerData
- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput function
cutpoints
- cutpoint array, produced by cutpoints.R/findcuts function
groupIndex
- index of the group
rfmatrix
- recombination frequency matrix, produced by the rfmatrix.R/computeRFmat function
Value
TSP solution object that is identical to markerData, but with the markers of the selected group in reverse order.
NOTE: this function updates the rf values and cumulative rf values, but does not update genetic distance values (if present).
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
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Description Usage Arguments Value
Description
Reverse the order of markers in a group within a TSP solution object.
Usage
1 | reverseGroup(markerData, cutpoints, groupIndex, rfmatrix)
|
Arguments
markerData |
- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput function |
cutpoints |
- cutpoint array, produced by cutpoints.R/findcuts function |
groupIndex |
- index of the group |
rfmatrix |
- recombination frequency matrix, produced by the rfmatrix.R/computeRFmat function |
Value
TSP solution object that is identical to markerData, but with the markers of the selected group in reverse order. NOTE: this function updates the rf values and cumulative rf values, but does not update genetic distance values (if present).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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