Description Usage Arguments Value
View source: R/computeKosambi.R
Compute genetic distances (in centiMorgans) by the Kosambi method, and assign a group number to the markers based on which cutpoint group they are in. NOTE: Recombination frequency values should NOT be divided by 2 before being passed to this function, the function takes care of that.
1 | computeKosambi(pathData, cutpoints)
|
pathData |
- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput functions |
cutpoints |
- cutpoint array, as produced by the cutpoints.R/findcuts function. The default is NULL, which means that pathData consists of a single chromosome and therefore cutpoints are not needed. |
TSP solution object identical to pathData along with genetic distances and group numbers
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