processConcordeOutput: Process Concorde solution file

In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps

Description

Process Concorde solution file.

Usage

processConcordeOutput(filename, markerdata, rfmat)

Arguments

filename	path and name of Concode solution file, which is returned from the function callConcorde (this file has a .sol extension)
markerdata	main marker data file, produced by either the readfile.R/readFile function or the duplicatemarkers.R/removedups function
rfmat	recombination frequency matrix, produced by the rfmatrix.R/computeRFmat function

Value

TSP solution object, containing: 1. the index of the markers in the main marker data object 2. marker name 3. rf value between each marker and the next 4. cumulative rf value

mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.