sortRFmatrix: This function sorts the rfmatrix so that the markers are in...

Description Usage Arguments Value

Description

This function sorts the rfmatrix so that the markers are in the same order as the TSP tour. The resultant matrix of this function is used in the cutpoints.R/matchGroups function. NOTE: The resultant matrix of this function cannot be sent to the writeRFmat function because the columns/rows no longer match up with the main markerdata object.

Usage

1
sortRFmatrix(rfmatrix, pathData, saveFlag)

Arguments

rfmatrix

- matrix of recombination frequency values produced by the rfmatrix.R/computeRFmat function

pathData

- TSP tour and weights, produced by the TSPinterface.R/processConcordeOutput function

saveFlag

- if saveFlag == 1, save sorted matrix to file

Value

matrix of recombination frequency values sorted in order of TSP tour


mckaylab/TSPmap documentation built on May 22, 2019, 3:03 p.m.