sortRFmatrix: This function sorts the rfmatrix so that the markers are in...
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
Description
This function sorts the rfmatrix so that the markers are in the same order as the TSP tour.
The resultant matrix of this function is used in the cutpoints.R/matchGroups function.
NOTE: The resultant matrix of this function cannot be sent to the writeRFmat function because the columns/rows no longer match up with the main markerdata object.
Usage
1
sortRFmatrix(rfmatrix, pathData, saveFlag)
Arguments
rfmatrix
- matrix of recombination frequency values produced by the rfmatrix.R/computeRFmat function
pathData
- TSP tour and weights, produced by the TSPinterface.R/processConcordeOutput function
saveFlag
- if saveFlag == 1, save sorted matrix to file
Value
matrix of recombination frequency values sorted in order of TSP tour
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
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Description Usage Arguments Value
Description
This function sorts the rfmatrix so that the markers are in the same order as the TSP tour. The resultant matrix of this function is used in the cutpoints.R/matchGroups function. NOTE: The resultant matrix of this function cannot be sent to the writeRFmat function because the columns/rows no longer match up with the main markerdata object.
Usage
1 | sortRFmatrix(rfmatrix, pathData, saveFlag)
|
Arguments
rfmatrix |
- matrix of recombination frequency values produced by the rfmatrix.R/computeRFmat function |
pathData |
- TSP tour and weights, produced by the TSPinterface.R/processConcordeOutput function |
saveFlag |
- if saveFlag == 1, save sorted matrix to file |
Value
matrix of recombination frequency values sorted in order of TSP tour
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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